Run the database repair routine in CM3
Make sure you are not only seeing the "gold star" favourites when in the main program.
You may have a faulty download of the patch-try downloading again and installing again. Hope you kept a backup before you ran the patch........(OH Dear....). Worst scenario- You may have to re-install TRS2010, then patch,then re-download everything.
There are other threads on problems people have had after installing the service pack-do a forum search ( look in the TRS2010 threads-this is really where you should be asking the question). Especially the posting set as a "sticky" from Zec at Auran.