You have a bunch of things confused here, "came with the game" - if it came with the game that's called "built in", and you can see the "built in" tag by hovering the mouse over the little notebook icon on the left. "Local" doesn't mean the same as "built in", you can fix faulty tags for built in content by right clicking and revert, but if it didn't "come with the game" that won't fix the errors.
EMD 10 Blade 48 Radiator Fan,<kuid2:45324:85308:2>
Is shown in one of your pics, that IS built in and the right click - edit - revert should fix it.
edc_dock_7789,<kuid:1984:27789>
Is not built in, it did not come with the game, you probably downloaded a route which required that and the download helper installed it for the route. That one is build 1.3, if I right click and "View errors and warnings" and ignore the ones about thumbnail containers and obsolete build not supported, I have left;
Error: Unable to load animation file 'hash-26\kuid 1984 27789/edc_dock_7789/anim.kin' (no resource).
Error: Unable to load animation file 'hash-26\kuid 1984 27789\edc_dock_7789\anim.kin' (no resource).
I suspect your best bet is to download this;
edc dock 7789-TRS2010,<kuid:439337:100164>
And use the "replace assets" utility in surveyor for whatever route uses it. Although whatever route uses it probably has a lot of other problems, might be better finding another route.
Other things on the list, I can't find any SP AC4400 or CN SD50 or SD60, so you must have gotten those from a third party website.
CP AC4400cw #9531,<kuid:95761:205>
CP AC4400cw #9586,<kuid:95761:206>
Those are both build 2.0, which predates TRS2004, I haven't downloaded them to see what errors they may have but probably a bunch.
I would suggest using TS2010 with compatibility mode if you're going to download a bunch of old stuff and don't want to take the time to learn how to fix it, use TS12 only for modern stuff or start learning how to update.