Just to be clear none of the SP1 updates on the JR site would fix the ones this user is experiencing issues with. These are all dependencies of the route that are showing faulty and are either from other 3rd party sources or the DLS. Basically.....we can't fix them.
Theres one exception however which is that wood grade crossing. Grab that from our site and overwrite the currently installed one and youll be fine on that one...