Try to avoid using "Big Block Head" "Snap To Grid" tunnels
Use 1x1 digholes, and center the track on them
Adjust tracks so that they are aproximatly in the center of the bottom plane of the dighole 1x1
Adjust the Tunnel Portal just so that it covers up the bottom, outrmost plane of the dighole
You will have to tug up/down (using radius set at minimum) on the the 2 upper corners of the dighole 1x1 plane, so that it just touches the top portion of the Tunnel Portal
Placing Twees and Gwass you will cover up a multitude of sins
Tunnel3_1 voie by Fred24